TB-Profiler result

Run: SRR13837749
Summary

Run ID: SRR13837749

Sample name:

Date: 03-04-2023 09:17:35

Number of reads: 2938114

Percentage reads mapped: 99.0

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7877 p.His192Gln missense_variant 1.0
mshA 576146 p.Val267Leu missense_variant 1.0
rpoB 759869 c.63C>T synonymous_variant 1.0
rpoC 763782 p.Ser138* stop_gained 1.0
rpoC 764568 p.Lys400Thr missense_variant 1.0
mmpL5 777073 p.Lys470Glu missense_variant 1.0
mmpL5 777311 c.1170C>T synonymous_variant 1.0
mmpL5 778981 c.-501C>A upstream_gene_variant 1.0
rplC 801436 p.Ser210Arg missense_variant 1.0
fbiC 1303686 c.756C>G synonymous_variant 1.0
rrs 1472605 n.760G>C non_coding_transcript_exon_variant 1.0
inhA 1674376 p.Pro59Ser missense_variant 1.0
tlyA 1917844 c.-96C>A upstream_gene_variant 1.0
tlyA 1918260 p.His107Gln missense_variant 1.0
katG 2154461 p.Ala551Pro missense_variant 1.0
Rv1979c 2222535 c.630C>G synonymous_variant 1.0
kasA 2518608 p.Met165Thr missense_variant 1.0
eis 2714211 c.1122G>A synonymous_variant 1.0
ahpC 2726250 p.Gly20Arg missense_variant 1.0
fprA 3473932 c.-75G>A upstream_gene_variant 1.0
Rv3236c 3612518 p.Tyr200Ser missense_variant 1.0
fbiB 3641684 p.Ser50Arg missense_variant 1.0
embC 4240263 p.Val134Ala missense_variant 1.0
embC 4240920 p.Leu353Pro missense_variant 1.0
embC 4241504 p.Val548Met missense_variant 1.0
embB 4248000 p.Asp496Val missense_variant 1.0
aftB 4268715 p.Leu41Pro missense_variant 1.0
ethR 4327704 p.Lys52Asn missense_variant 1.0