TB-Profiler result

Run: SRR13837763
Summary

Run ID: SRR13837763

Sample name:

Date: 2024-04-15T07:52:41.510036

Number of reads: 146914

Percentage reads mapped: 96.01

Median coverage: 5.0

Strain: lineage4.9

Spoligotype:

Drug-resistance: Sensitive

Download CSV Download TXT Download JSON
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage4 Euro-American None 1.0
lineage4.9 Euro-American (H37Rv-like) None 1.0
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
streptomycin
fluoroquinolones
moxifloxacin
ofloxacin
levofloxacin
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
gyrA 7289 c.-13_-12insT upstream_gene_variant 1.0 levofloxacin
moxifloxacin
Rv1129c 1253885 p.Lys217Arg missense_variant 1.0 moxifloxacin
levofloxacin
rifampicin
isoniazid
bacA 2064693 p.Trp12Cys missense_variant 1.0 streptomycin
kanamycin
capreomycin
amikacin