Run ID: SRR13837774
Sample name:
Date: 03-04-2023 09:18:07
Number of reads: 146934
Percentage reads mapped: 95.01
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833449 | c.-93G>T | upstream_gene_variant | 1.0 |
PPE35 | 2168966 | c.1647G>C | synonymous_variant | 1.0 |
Rv1979c | 2222009 | p.Phe386Ile | missense_variant | 1.0 |
ahpC | 2726279 | p.Lys29Asn | missense_variant | 1.0 |
thyA | 3074493 | c.-22C>T | upstream_gene_variant | 1.0 |
whiB7 | 3568433 | p.Arg83Cys | missense_variant | 1.0 |
clpC1 | 4038485 | c.2220C>T | synonymous_variant | 1.0 |
embB | 4248644 | p.Ala711Pro | missense_variant | 1.0 |
aftB | 4267225 | p.Ile538Phe | missense_variant | 1.0 |
ubiA | 4269050 | p.Tyr262Asp | missense_variant | 1.0 |
ethR | 4327699 | p.Ala51Ser | missense_variant | 1.0 |
ethA | 4328373 | c.-900A>G | upstream_gene_variant | 1.0 |
gid | 4407962 | p.Ile81Val | missense_variant | 0.33 |