Run ID: SRR13837786
Sample name:
Date: 03-04-2023 09:18:40
Number of reads: 2946024
Percentage reads mapped: 99.27
Strain: lineage4.9
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155058 | p.Gln352* | stop_gained | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 760182 | p.Pro126Ala | missense_variant | 1.0 |
rrs | 1472286 | n.441C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472762 | n.917C>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472840 | n.997delG | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 1.0 |
ndh | 2102692 | c.350_351insA | frameshift_variant | 1.0 |
katG | 2155551 | c.561G>T | synonymous_variant | 1.0 |
eis | 2715425 | c.-93G>C | upstream_gene_variant | 1.0 |
fprA | 3473990 | c.-17A>T | upstream_gene_variant | 1.0 |
fprA | 3474095 | c.91delG | frameshift_variant | 1.0 |
fprA | 3474441 | c.436delT | frameshift_variant | 1.0 |
alr | 3840436 | p.Leu329Val | missense_variant | 1.0 |
clpC1 | 4038224 | c.2481G>C | synonymous_variant | 1.0 |
clpC1 | 4038878 | c.1826_1827insG | frameshift_variant | 1.0 |
aftB | 4268216 | p.Trp207Cys | missense_variant | 1.0 |
aftB | 4268782 | p.Trp19Arg | missense_variant | 1.0 |
aftB | 4269678 | c.-842C>T | upstream_gene_variant | 1.0 |
ubiA | 4269868 | c.-35G>C | upstream_gene_variant | 1.0 |
ethR | 4327906 | p.Val120Leu | missense_variant | 1.0 |