Run ID: SRR13837787
Sample name:
Date: 03-04-2023 09:18:34
Number of reads: 146913
Percentage reads mapped: 99.0
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5210 | c.-30C>G | upstream_gene_variant | 1.0 |
mmpS5 | 778670 | p.Gln79Pro | missense_variant | 1.0 |
rpsL | 781927 | p.Lys123Met | missense_variant | 1.0 |
fbiC | 1304806 | p.Pro626Thr | missense_variant | 1.0 |
rpsA | 1834614 | p.Ile358Ser | missense_variant | 1.0 |
katG | 2156228 | c.-117T>A | upstream_gene_variant | 0.4 |
PPE35 | 2169834 | p.Gly260Val | missense_variant | 1.0 |
kasA | 2518887 | p.Gly258Val | missense_variant | 1.0 |
eis | 2715520 | c.-188C>T | upstream_gene_variant | 1.0 |
ahpC | 2725916 | c.-277_-276insA | upstream_gene_variant | 1.0 |
pepQ | 2859750 | c.669C>T | synonymous_variant | 1.0 |
clpC1 | 4039006 | p.Ala567Ser | missense_variant | 0.22 |
embA | 4245437 | p.Met735Ile | missense_variant | 1.0 |
embB | 4246876 | c.363G>A | synonymous_variant | 1.0 |
embB | 4248914 | p.Ala801Thr | missense_variant | 1.0 |
ubiA | 4269329 | p.Lys169Glu | missense_variant | 1.0 |
ethA | 4326973 | p.Trp167Cys | missense_variant | 1.0 |
ethA | 4327382 | p.Ser31Ile | missense_variant | 1.0 |