Run ID: SRR13837803
Sample name:
Date: 03-04-2023 09:18:57
Number of reads: 146897
Percentage reads mapped: 98.01
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5417 | p.Gly60Ser | missense_variant | 1.0 |
gyrB | 6381 | p.Lys381Arg | missense_variant | 1.0 |
fgd1 | 491364 | c.582T>C | synonymous_variant | 1.0 |
fgd1 | 491557 | p.Lys259* | stop_gained | 1.0 |
Rv1258c | 1406579 | c.762C>T | synonymous_variant | 1.0 |
rrl | 1473445 | n.-213G>T | upstream_gene_variant | 1.0 |
rrl | 1475387 | n.1730C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673735 | p.Arg99Leu | missense_variant | 1.0 |
inhA | 1674246 | c.45C>T | synonymous_variant | 1.0 |
inhA | 1674937 | c.736C>T | synonymous_variant | 1.0 |
rpsA | 1833345 | c.-196delC | upstream_gene_variant | 1.0 |
PPE35 | 2170775 | c.-163T>A | upstream_gene_variant | 1.0 |
pncA | 2289663 | c.-422A>G | upstream_gene_variant | 1.0 |
pncA | 2290143 | c.-903_-902insG | upstream_gene_variant | 1.0 |
eis | 2714984 | p.Ala117Thr | missense_variant | 1.0 |
ahpC | 2726534 | c.342C>T | synonymous_variant | 1.0 |
thyA | 3074240 | p.Thr78Ser | missense_variant | 1.0 |
ald | 3086806 | c.-14_-13insA | upstream_gene_variant | 1.0 |
Rv3083 | 3448862 | p.Gly120Ala | missense_variant | 1.0 |
fprA | 3473896 | c.-110delA | upstream_gene_variant | 1.0 |
alr | 3840667 | p.Arg252Gly | missense_variant | 1.0 |
rpoA | 3878142 | c.366C>G | synonymous_variant | 1.0 |
clpC1 | 4040117 | p.Glu196Asp | missense_variant | 1.0 |
embA | 4242988 | c.-245A>G | upstream_gene_variant | 1.0 |
embB | 4249182 | p.His890Arg | missense_variant | 0.4 |
ubiA | 4269624 | p.Tyr70* | stop_gained | 1.0 |
ethR | 4328039 | p.Arg164Pro | missense_variant | 1.0 |
whiB6 | 4338235 | p.Arg96Leu | missense_variant | 1.0 |