Run ID: SRR13837824
Sample name:
Date: 2025-02-11T20:22:51.655186
Number of reads: 147857
Percentage reads mapped: 98.62
Median coverage: 5.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrA | 8820 | p.Asp507His | missense_variant | 0.91 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
fbiC | 1304512 | p.Val528Ile | missense_variant | 1.0 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
rpsA | 1834175 | p.Arg212* | stop_gained | 0.92 | pyrazinamide | Uncertain significance |