TB-Profiler result

Run: SRR13837825
Summary

Run ID: SRR13837825

Sample name:

Date: 03-04-2023 09:19:25

Number of reads: 148220

Percentage reads mapped: 97.87

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8827 p.Asp509Gly missense_variant 1.0
mmpR5 779201 p.Ala71Val missense_variant 1.0
fbiC 1305062 p.Gly711Glu missense_variant 1.0
rrs 1472361 n.516C>G non_coding_transcript_exon_variant 0.8
fabG1 1673615 p.Glu59Val missense_variant 0.33
fabG1 1673633 p.Ser65Asn missense_variant 0.29
fabG1 1673890 p.Ala151Ser missense_variant 0.25
rpsA 1834620 p.Leu360Ser missense_variant 1.0
tlyA 1918366 p.Ala143Pro missense_variant 1.0
ndh 2101701 c.1341delG frameshift_variant 1.0
PPE35 2170109 c.504C>T synonymous_variant 1.0
kasA 2518676 p.Gly188Cys missense_variant 1.0
eis 2714749 p.Val195Ala missense_variant 1.0
eis 2715045 c.288G>A synonymous_variant 1.0
Rv2752c 3067080 c.-889G>C upstream_gene_variant 1.0
clpC1 4039055 p.Ile550Met missense_variant 1.0
embC 4242797 p.Asp979His missense_variant 1.0
embB 4247936 p.Thr475Ala missense_variant 1.0