Run ID: SRR13837834
Sample name:
Date: 03-04-2023 09:19:38
Number of reads: 147613
Percentage reads mapped: 96.44
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6715 | c.-587C>T | upstream_gene_variant | 0.75 |
mshA | 575693 | p.Pro116Ala | missense_variant | 1.0 |
rpoB | 760399 | p.Val198Ala | missense_variant | 1.0 |
rpoB | 763150 | p.Phe1115Tyr | missense_variant | 1.0 |
rpoC | 763363 | c.-7G>C | upstream_gene_variant | 0.4 |
rpoC | 764242 | c.873C>T | synonymous_variant | 0.25 |
rpoC | 764254 | c.885G>C | synonymous_variant | 0.25 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.4 |
rpoC | 764516 | p.Asp383Asn | missense_variant | 0.75 |
rpoC | 766103 | p.Arg912Gly | missense_variant | 1.0 |
mmpL5 | 777066 | p.Ile472Ser | missense_variant | 1.0 |
ndh | 2103185 | c.-143A>C | upstream_gene_variant | 1.0 |
PPE35 | 2168894 | c.1718dupG | frameshift_variant | 1.0 |
PPE35 | 2170039 | p.Ala192Thr | missense_variant | 1.0 |
Rv1979c | 2221777 | p.Ala463Val | missense_variant | 1.0 |
kasA | 2518793 | p.Ser227Thr | missense_variant | 1.0 |
ahpC | 2726300 | c.108C>A | synonymous_variant | 1.0 |
folC | 2747094 | p.Asp169His | missense_variant | 1.0 |
Rv2752c | 3064936 | p.Ser419* | stop_gained | 1.0 |
Rv2752c | 3065523 | c.669C>T | synonymous_variant | 1.0 |
Rv2752c | 3066039 | c.153C>T | synonymous_variant | 1.0 |
alr | 3841286 | c.135T>A | synonymous_variant | 1.0 |
clpC1 | 4039368 | p.Lys446Thr | missense_variant | 1.0 |
panD | 4043913 | p.Phe123Leu | missense_variant | 0.4 |
ubiA | 4269888 | c.-55C>A | upstream_gene_variant | 1.0 |