TB-Profiler result

Run: SRR13837847
Summary

Run ID: SRR13837847

Sample name:

Date: 2024-04-15T10:14:36.795650

Number of reads: 146886

Percentage reads mapped: 99.0

Median coverage: 4.0

Strain: lineage4.9

Spoligotype:

Drug-resistance: Sensitive

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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage4 Euro-American None 1.0
lineage4.9 Euro-American (H37Rv-like) None 1.0
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
streptomycin
fluoroquinolones
moxifloxacin
ofloxacin
levofloxacin
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
thyX 3067731 p.Val72Ala missense_variant 1.0 para-aminosalicylic_acid
thyX 3067825 p.Arg41Gly missense_variant 1.0 para-aminosalicylic_acid
ethA 4327092 p.Ala128Pro missense_variant 1.0 ethionamide