TB-Profiler result

Run: SRR13837861
Summary

Run ID: SRR13837861

Sample name:

Date: 03-04-2023 09:20:19

Number of reads: 147738

Percentage reads mapped: 98.56

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761057 c.1251G>C synonymous_variant 0.33
rpoC 762698 c.-672C>T upstream_gene_variant 1.0
rpoB 762958 p.Leu1051Pro missense_variant 1.0
fbiC 1302962 p.Ala11Gly missense_variant 1.0
fbiC 1303706 p.Leu259Arg missense_variant 1.0
fbiC 1304691 c.1761G>C synonymous_variant 0.4
fbiC 1304694 c.1764A>C synonymous_variant 0.4
fbiC 1305384 c.2454G>T synonymous_variant 1.0
Rv1258c 1406724 p.Gln206Leu missense_variant 1.0
embR 1416800 p.Ala183Gly missense_variant 1.0
fabG1 1673153 c.-287C>G upstream_gene_variant 1.0
rpsA 1833555 p.Thr5Ser missense_variant 1.0
rpsA 1834073 p.Lys178* stop_gained 1.0
PPE35 2167669 p.Phe982Leu missense_variant 1.0
Rv2752c 3066234 c.-43G>A upstream_gene_variant 1.0
fbiB 3642276 c.743delC frameshift_variant 1.0
rpoA 3878111 p.Lys133Gln missense_variant 1.0
embA 4242703 c.-530C>T upstream_gene_variant 1.0
embB 4249144 c.2631G>C synonymous_variant 1.0