Run ID: SRR13837891
Sample name:
Date: 03-04-2023 09:21:13
Number of reads: 1473635
Percentage reads mapped: 99.31
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6406 | p.Asn389Lys | missense_variant | 1.0 |
mshA | 575880 | p.His178Pro | missense_variant | 1.0 |
mshA | 576356 | p.Ala337Ser | missense_variant | 1.0 |
fbiC | 1303517 | p.Met196Arg | missense_variant | 1.0 |
rrl | 1473558 | n.-100T>G | upstream_gene_variant | 1.0 |
fabG1 | 1673792 | p.Arg118Leu | missense_variant | 1.0 |
rpsA | 1833709 | c.168C>T | synonymous_variant | 1.0 |
rpsA | 1834448 | p.Lys303* | stop_gained | 1.0 |
tlyA | 1918103 | p.Val55Ala | missense_variant | 1.0 |
tlyA | 1918250 | p.Gly104Ala | missense_variant | 1.0 |
katG | 2156538 | c.-427A>T | upstream_gene_variant | 1.0 |
Rv1979c | 2222544 | c.621G>A | synonymous_variant | 1.0 |
eis | 2715078 | c.255C>G | synonymous_variant | 1.0 |
folC | 2747750 | c.-152G>C | upstream_gene_variant | 1.0 |
ald | 3086982 | p.Ala55Pro | missense_variant | 1.0 |
Rv3083 | 3449935 | p.Ile478Val | missense_variant | 1.0 |
fbiB | 3642147 | p.Val205Phe | missense_variant | 1.0 |
fbiB | 3642189 | p.Gly219Trp | missense_variant | 1.0 |
clpC1 | 4039120 | p.Ser529Ala | missense_variant | 1.0 |
clpC1 | 4039306 | p.Gln467Lys | missense_variant | 0.98 |
clpC1 | 4039400 | c.1304delA | frameshift_variant | 0.98 |
ethA | 4327034 | p.Tyr147Phe | missense_variant | 1.0 |
gid | 4408038 | p.Ile55Met | missense_variant | 1.0 |