TB-Profiler result

Run: SRR13837892
Summary

Run ID: SRR13837892

Sample name:

Date: 03-04-2023 09:21:09

Number of reads: 1469078

Percentage reads mapped: 97.0

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6406 p.Asn389Lys missense_variant 1.0
mshA 575880 p.His178Pro missense_variant 1.0
mshA 576356 p.Ala337Ser missense_variant 1.0
fbiC 1303517 p.Met196Arg missense_variant 1.0
rrl 1473558 n.-100T>G upstream_gene_variant 1.0
fabG1 1673792 p.Arg118Leu missense_variant 1.0
rpsA 1833709 c.168C>T synonymous_variant 1.0
rpsA 1834448 p.Lys303* stop_gained 1.0
tlyA 1918103 p.Val55Ala missense_variant 1.0
tlyA 1918250 p.Gly104Ala missense_variant 1.0
katG 2156538 c.-427A>T upstream_gene_variant 1.0
Rv1979c 2222544 c.621G>A synonymous_variant 1.0
eis 2715078 c.255C>G synonymous_variant 1.0
folC 2747750 c.-152G>C upstream_gene_variant 1.0
ald 3086982 p.Ala55Pro missense_variant 1.0
Rv3083 3449935 p.Ile478Val missense_variant 1.0
fbiB 3642147 p.Val205Phe missense_variant 1.0
fbiB 3642189 p.Gly219Trp missense_variant 1.0
clpC1 4039120 p.Ser529Ala missense_variant 1.0
clpC1 4039306 p.Gln467Lys missense_variant 1.0
clpC1 4039400 c.1304delA frameshift_variant 1.0
ethA 4327034 p.Tyr147Phe missense_variant 1.0
gid 4408038 p.Ile55Met missense_variant 1.0