Run ID: SRR13837895
Sample name:
Date: 03-04-2023 09:21:24
Number of reads: 1469460
Percentage reads mapped: 95.02
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6561 | p.Lys441Arg | missense_variant | 1.0 |
gyrA | 7705 | p.Thr135Ser | missense_variant | 1.0 |
gyrA | 8409 | p.Leu370Ile | missense_variant | 1.0 |
ccsA | 620157 | c.267G>T | synonymous_variant | 1.0 |
rplC | 801215 | c.408delC | frameshift_variant | 1.0 |
fbiC | 1304409 | c.1479C>G | synonymous_variant | 1.0 |
fbiC | 1304501 | p.Ala524Gly | missense_variant | 0.98 |
rrs | 1472791 | n.946G>C | non_coding_transcript_exon_variant | 1.0 |
PPE35 | 2168564 | c.2049T>A | synonymous_variant | 1.0 |
kasA | 2519179 | c.1065G>C | synonymous_variant | 1.0 |
folC | 2746546 | p.Asp351Glu | missense_variant | 1.0 |
thyX | 3068038 | c.-93C>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
Rv3236c | 3612721 | c.396G>T | synonymous_variant | 1.0 |
fbiA | 3641221 | p.Pro227Ala | missense_variant | 1.0 |
clpC1 | 4039647 | p.Glu353Ala | missense_variant | 1.0 |
embC | 4240006 | c.144A>C | synonymous_variant | 1.0 |
embA | 4244074 | p.Ala281Val | missense_variant | 1.0 |
embA | 4245739 | p.Arg836His | missense_variant | 1.0 |
ethA | 4326731 | p.Ala248Gly | missense_variant | 1.0 |
ethR | 4327623 | c.75_76insC | frameshift_variant | 1.0 |
gid | 4408334 | c.-132G>T | upstream_gene_variant | 1.0 |