Run ID: SRR13837915
Sample name:
Date: 03-04-2023 09:21:53
Number of reads: 1485856
Percentage reads mapped: 97.1
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5760 | p.Trp174Leu | missense_variant | 1.0 |
gyrB | 6662 | p.Phe475Val | missense_variant | 1.0 |
rpoB | 760087 | p.Ser94Phe | missense_variant | 1.0 |
rpoC | 766854 | p.Leu1162Gln | missense_variant | 0.93 |
mmpL5 | 778416 | p.Pro22Leu | missense_variant | 1.0 |
rplC | 801126 | c.318C>T | synonymous_variant | 1.0 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473945 | n.288T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1473946 | n.289A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1473986 | n.329T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473987 | n.330G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475354 | n.1697A>T | non_coding_transcript_exon_variant | 0.97 |
inhA | 1674867 | p.Trp222Cys | missense_variant | 0.95 |
katG | 2154601 | p.Gly504Val | missense_variant | 1.0 |
Rv1979c | 2222910 | c.255A>G | synonymous_variant | 1.0 |
pepQ | 2859714 | c.705C>A | synonymous_variant | 1.0 |
ald | 3087172 | p.Glu118Ala | missense_variant | 1.0 |
ald | 3087905 | c.1086G>A | synonymous_variant | 1.0 |
fprA | 3475069 | c.1064dupA | frameshift_variant&stop_gained | 1.0 |
Rv3236c | 3613280 | c.-164G>C | upstream_gene_variant | 1.0 |
alr | 3841499 | c.-79C>T | upstream_gene_variant | 1.0 |
rpoA | 3878156 | p.Val118Met | missense_variant | 0.98 |
clpC1 | 4039113 | p.Ala531Asp | missense_variant | 1.0 |
embC | 4242095 | p.Ala745Pro | missense_variant | 1.0 |
embB | 4247621 | c.1108C>T | synonymous_variant | 1.0 |
aftB | 4269585 | c.-749G>A | upstream_gene_variant | 1.0 |
ubiA | 4269776 | p.Ala20Pro | missense_variant | 1.0 |
ethA | 4328211 | c.-739delG | upstream_gene_variant | 1.0 |