TB-Profiler result

Run: SRR13837929
Summary

Run ID: SRR13837929

Sample name:

Date: 03-04-2023 09:22:09

Number of reads: 1469239

Percentage reads mapped: 98.01

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7018 c.-284G>T upstream_gene_variant 1.0
mshA 576668 c.1322dupA frameshift_variant&stop_gained 1.0
rpoC 765100 c.1731G>C synonymous_variant 1.0
mmpL5 776059 p.Val808Met missense_variant 1.0
fbiC 1304599 p.Ile557Phe missense_variant 1.0
embR 1417348 c.-1A>T upstream_gene_variant 1.0
rrl 1473631 n.-27T>C upstream_gene_variant 1.0
rpsA 1833855 p.Lys105Thr missense_variant 1.0
PPE35 2170030 p.Met195Leu missense_variant 1.0
kasA 2518276 p.Trp54* stop_gained 1.0
kasA 2518352 p.Met80Val missense_variant 1.0
eis 2714478 c.855C>A synonymous_variant 1.0
pepQ 2860170 c.248_249insA frameshift_variant 1.0
Rv2752c 3065335 p.Leu286Arg missense_variant 1.0
fbiB 3641019 c.-516G>A upstream_gene_variant 1.0
fbiB 3641941 p.Leu136Gln missense_variant 1.0
embC 4241292 p.Leu477Gln missense_variant 0.98
embC 4242011 p.Leu717Val missense_variant 1.0
embB 4248720 p.Gly736Ala missense_variant 1.0
embB 4249676 p.Arg1055Cys missense_variant 1.0
aftB 4267927 p.Ala304Ser missense_variant 1.0