Run ID: SRR13837934
Sample name:
Date: 03-04-2023 09:22:24
Number of reads: 1478405
Percentage reads mapped: 98.62
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7837 | p.Gly179Val | missense_variant | 1.0 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.98 |
mmpL5 | 777730 | p.Gly251Arg | missense_variant | 1.0 |
fbiC | 1304816 | p.His629Arg | missense_variant | 1.0 |
fbiC | 1304869 | p.Leu647Met | missense_variant | 1.0 |
tlyA | 1918527 | c.588G>T | synonymous_variant | 1.0 |
ndh | 2102259 | p.Ser262Ala | missense_variant | 1.0 |
ndh | 2102557 | c.485delG | frameshift_variant | 1.0 |
katG | 2156260 | c.-149C>A | upstream_gene_variant | 1.0 |
PPE35 | 2169123 | p.Thr497Ile | missense_variant | 1.0 |
Rv2752c | 3066145 | p.Leu16Ser | missense_variant | 1.0 |
Rv3236c | 3612326 | p.Thr264Ile | missense_variant | 1.0 |
Rv3236c | 3612504 | p.His205Tyr | missense_variant | 1.0 |
Rv3236c | 3612779 | p.Leu113* | stop_gained | 1.0 |
fbiB | 3640821 | c.-714G>C | upstream_gene_variant | 1.0 |
rpoA | 3878381 | p.Leu43Met | missense_variant | 0.98 |
rpoA | 3878543 | c.-36G>C | upstream_gene_variant | 1.0 |
embC | 4240536 | c.678delC | frameshift_variant | 1.0 |
embB | 4248562 | c.2049G>C | synonymous_variant | 1.0 |