Run ID: SRR13861260
Sample name:
Date: 03-04-2023 09:27:22
Number of reads: 103468
Percentage reads mapped: 5.18
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 762698 | c.-672C>T | upstream_gene_variant | 1.0 |
rpoB | 762958 | p.Leu1051Pro | missense_variant | 1.0 |
fbiC | 1302962 | p.Ala11Gly | missense_variant | 1.0 |
fbiC | 1303706 | p.Leu259Arg | missense_variant | 1.0 |
Rv1258c | 1406724 | p.Gln206Leu | missense_variant | 1.0 |
embR | 1416800 | p.Ala183Gly | missense_variant | 1.0 |
fabG1 | 1673153 | c.-287C>G | upstream_gene_variant | 1.0 |
rpsA | 1833555 | p.Thr5Ser | missense_variant | 1.0 |
rpsA | 1834073 | p.Lys178* | stop_gained | 1.0 |
Rv2752c | 3066234 | c.-43G>A | upstream_gene_variant | 1.0 |
fbiB | 3642276 | c.743delC | frameshift_variant | 1.0 |
rpoA | 3878111 | p.Lys133Gln | missense_variant | 1.0 |
embA | 4242703 | c.-530C>T | upstream_gene_variant | 1.0 |
embB | 4249144 | c.2631G>C | synonymous_variant | 1.0 |