TB-Profiler result

Run: SRR13861300

Summary

Run ID: SRR13861300

Sample name:

Date: 03-04-2023 09:28:22

Number of reads: 9778

Percentage reads mapped: 0.33

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fbiC 1303593 c.663G>A synonymous_variant 1.0
rpsA 1833352 c.-190C>A upstream_gene_variant 1.0
pepQ 2860286 p.Val45Leu missense_variant 1.0