Run ID: SRR13861302
Sample name:
Date: 2024-04-15T22:29:42.455845
Number of reads: 169981
Percentage reads mapped: 5.67
Median coverage: 5.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrA | 8436 | p.Tyr379Asn | missense_variant | 1.0 | levofloxacin | |
moxifloxacin | ||||||
fgd1 | 491701 | p.His307Asn | missense_variant | 1.0 | clofazimine | |
pretomanid | ||||||
delamanid | ||||||
embB | 4247198 | p.Thr229Pro | missense_variant | 1.0 | ethambutol |