TB-Profiler result

Run: SRR13861313

Summary

Run ID: SRR13861313

Sample name:

Date: 03-04-2023 09:28:45

Number of reads: 82824

Percentage reads mapped: 2.76

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5922 p.Glu228Gly missense_variant 1.0
gyrB 7242 p.Lys668Thr missense_variant 1.0
rpoB 761356 c.1550_1551insA frameshift_variant 1.0
rpoC 763347 c.-23C>G upstream_gene_variant 1.0
mmpL5 776145 p.Ala779Gly missense_variant 1.0
mmpL5 776954 p.Lys509Asn missense_variant 1.0
atpE 1460916 c.-129G>A upstream_gene_variant 1.0
PPE35 2168892 p.Thr574Lys missense_variant 1.0
Rv1979c 2222852 p.Ala105Thr missense_variant 1.0
Rv2752c 3065161 p.Asn344Thr missense_variant 1.0
Rv2752c 3065830 p.Ile121Thr missense_variant 1.0
fbiD 3339117 c.-1C>T upstream_gene_variant 1.0
Rv3083 3448661 p.Val53Ala missense_variant 1.0
Rv3236c 3612041 p.Val359Glu missense_variant 1.0
fbiA 3640418 c.-125C>A upstream_gene_variant 1.0
rpoA 3877877 p.Ala211Ser missense_variant 1.0
embC 4242113 c.2251C>T synonymous_variant 1.0
embB 4246367 c.-147C>T upstream_gene_variant 1.0
whiB6 4338567 c.-46C>T upstream_gene_variant 1.0