Run ID: SRR13861405
Sample name:
Date: 03-04-2023 09:30:53
Number of reads: 420060
Percentage reads mapped: 10.51
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5624 | p.Asn129Asp | missense_variant | 1.0 |
mshA | 575194 | c.-154G>T | upstream_gene_variant | 1.0 |
mshA | 576148 | c.801G>C | synonymous_variant | 0.17 |
rpoB | 760907 | c.1101_1102insT | frameshift_variant | 1.0 |
rplC | 801226 | p.Gly140Arg | missense_variant | 1.0 |
embR | 1417503 | c.-156A>C | upstream_gene_variant | 1.0 |
rrl | 1476753 | n.3099delG | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673233 | c.-207T>G | upstream_gene_variant | 1.0 |
rpsA | 1833593 | c.53delC | frameshift_variant | 1.0 |
rpsA | 1834884 | p.Gln448Leu | missense_variant | 1.0 |
katG | 2156409 | c.-298G>T | upstream_gene_variant | 0.15 |
PPE35 | 2169282 | p.Arg444His | missense_variant | 1.0 |
ahpC | 2725932 | c.-261G>A | upstream_gene_variant | 1.0 |
pepQ | 2859739 | p.Ala227Gly | missense_variant | 1.0 |
pepQ | 2860197 | c.222T>C | synonymous_variant | 1.0 |
Rv3083 | 3448909 | p.Leu136Ile | missense_variant | 1.0 |
fbiA | 3640691 | p.Asp50Val | missense_variant | 1.0 |
fbiA | 3641204 | p.Gly221Asp | missense_variant | 1.0 |
clpC1 | 4039961 | p.Tyr248* | stop_gained | 1.0 |
embC | 4240818 | p.Thr319Arg | missense_variant | 1.0 |
embB | 4248081 | c.1569dupG | frameshift_variant | 1.0 |
ethA | 4327644 | c.-171G>A | upstream_gene_variant | 1.0 |