TB-Profiler result

Run: SRR13861413
Summary

Run ID: SRR13861413

Sample name:

Date: 03-04-2023 09:31:09

Number of reads: 233548

Percentage reads mapped: 5.84

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5532 c.295dupG frameshift_variant 1.0
gyrB 5832 p.Ala198Gly missense_variant 1.0
gyrB 6209 c.970C>T synonymous_variant 0.17
gyrB 6214 c.975G>C synonymous_variant 0.17
gyrB 6217 c.978G>C synonymous_variant 0.21
gyrB 6223 c.984G>C synonymous_variant 0.21
gyrB 6242 p.Arg335Lys missense_variant 0.14
gyrB 6250 c.1011A>G synonymous_variant 0.14
gyrB 6280 c.1041T>C synonymous_variant 0.14
gyrB 6286 c.1047T>C synonymous_variant 0.14
gyrB 6295 c.1056A>G synonymous_variant 0.14
gyrB 6298 c.1059C>T synonymous_variant 0.14
gyrB 6299 c.1060C>T synonymous_variant 0.14
gyrA 6307 c.-995T>G upstream_gene_variant 0.14
gyrA 6319 c.-983G>C upstream_gene_variant 0.15
gyrA 6325 c.-977C>G upstream_gene_variant 0.15
gyrA 6976 c.-326A>G upstream_gene_variant 1.0
gyrA 7532 c.231T>C synonymous_variant 0.29
gyrA 8294 c.993T>C synonymous_variant 0.22
gyrA 8693 c.1392T>C synonymous_variant 0.33
gyrA 8699 c.1398A>G synonymous_variant 0.33
gyrA 8711 c.1410A>C synonymous_variant 0.33
gyrA 8714 c.1413A>G synonymous_variant 0.25
gyrA 8717 c.1416C>G synonymous_variant 0.25
gyrA 8720 c.1419G>A synonymous_variant 0.25
gyrA 8729 c.1428T>C synonymous_variant 0.22
gyrA 8732 c.1431G>C synonymous_variant 0.2
gyrA 8747 c.1446A>G synonymous_variant 0.22
gyrA 8756 c.1455A>G synonymous_variant 0.22
gyrA 8762 c.1461G>C synonymous_variant 0.22
gyrA 8765 p.Asp488Glu missense_variant 0.22
gyrA 8767 p.Arg489Lys missense_variant 0.22
gyrA 8779 p.Asp493Ala missense_variant 0.22
gyrA 8786 c.1485T>C synonymous_variant 0.22
gyrA 9182 c.1881T>C synonymous_variant 0.33
gyrA 9191 c.1890G>C synonymous_variant 0.25
gyrA 9200 c.1899A>G synonymous_variant 0.29
gyrA 9204 p.Ser635Thr missense_variant 0.29
gyrA 9227 c.1926C>G synonymous_variant 0.4
gyrA 9230 c.1929T>C synonymous_variant 0.4
gyrA 9252 p.Val651Ile missense_variant 0.33
gyrA 9275 c.1974G>A synonymous_variant 0.29
gyrA 9278 c.1977G>C synonymous_variant 0.29
gyrA 9281 c.1980C>G synonymous_variant 0.29
gyrA 9284 c.1983T>C synonymous_variant 0.29
gyrA 9291 c.1990C>T synonymous_variant 0.29
gyrA 9296 c.1995T>C synonymous_variant 0.33
gyrA 9304 p.Gly668Glu missense_variant 0.33
gyrA 9311 c.2010C>T synonymous_variant 0.33
fgd1 491085 c.303T>C synonymous_variant 0.12
fgd1 491091 c.309T>C synonymous_variant 0.14
fgd1 491094 c.312C>G synonymous_variant 0.15
fgd1 491106 c.324T>C synonymous_variant 0.14
fgd1 491121 c.339A>G synonymous_variant 0.21
fgd1 491137 p.Glu119Gln missense_variant 0.23
fgd1 491144 p.Ala121Glu missense_variant 0.23
fgd1 491166 c.384G>C synonymous_variant 0.33
fgd1 491181 c.399T>C synonymous_variant 0.36
fgd1 491191 p.Gly137Arg missense_variant 0.25
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.25
fgd1 491202 c.420G>C synonymous_variant 0.27
fgd1 491203 p.Gln141Glu missense_variant 0.27
fgd1 491212 p.Ser144Arg missense_variant 0.33
fgd1 491217 c.435T>C synonymous_variant 0.33
fgd1 491232 c.450T>C synonymous_variant 0.5
fgd1 491241 p.Asp153Glu missense_variant 0.43
fgd1 491244 c.462T>C synonymous_variant 0.5
fgd1 491259 c.477T>C synonymous_variant 0.44
fgd1 491286 c.504G>C synonymous_variant 0.38
fgd1 491292 c.510G>C synonymous_variant 0.38
fgd1 491295 c.513C>G synonymous_variant 0.38
fgd1 491296 p.Val172Ile missense_variant 0.38
fgd1 491301 c.519C>T synonymous_variant 0.38
fgd1 491319 c.537G>C synonymous_variant 0.25
fgd1 491331 c.549G>A synonymous_variant 0.25
fgd1 491343 c.561C>G synonymous_variant 0.33
fgd1 491349 c.567T>C synonymous_variant 0.33
mshA 575623 c.276C>G synonymous_variant 0.18
mshA 575629 c.282A>C synonymous_variant 0.18
mshA 575635 c.288A>C synonymous_variant 0.18
mshA 575638 c.291T>C synonymous_variant 0.18
mshA 575641 c.294A>G synonymous_variant 0.18
mshA 575648 p.Val101Gln missense_variant 0.17
mshA 575659 c.312A>G synonymous_variant 0.14
mshA 575665 c.318G>C synonymous_variant 0.13
ccsA 619735 c.-156G>C upstream_gene_variant 1.0
ccsA 620100 c.210G>T synonymous_variant 1.0
rpoB 759609 c.-198C>A upstream_gene_variant 1.0
rpoB 760181 c.375T>C synonymous_variant 0.2
rpoB 760184 c.378A>G synonymous_variant 0.18
rpoB 760196 c.390C>G synonymous_variant 0.2
rpoB 760223 c.417T>C synonymous_variant 0.17
rpoB 760235 c.429T>C synonymous_variant 0.18
rpoB 760283 c.477G>C synonymous_variant 0.22
rpoB 760307 c.501T>C synonymous_variant 0.15
rpoB 760718 c.912C>G synonymous_variant 0.2
rpoB 760721 c.915C>G synonymous_variant 0.2
rpoB 760724 c.918T>C synonymous_variant 0.2
rpoB 760730 c.924T>C synonymous_variant 0.22
rpoB 760751 c.945G>C synonymous_variant 0.33
rpoB 760757 c.951T>C synonymous_variant 0.2
rpoB 760759 p.Val318Ala missense_variant 0.18
rpoB 760763 c.957C>T synonymous_variant 0.2
rpoB 760769 c.963C>G synonymous_variant 0.2
rpoB 760775 c.969G>C synonymous_variant 0.22
rpoB 760776 c.970_972delTCGinsAGC synonymous_variant 0.22
rpoB 760793 c.987A>G synonymous_variant 0.2
rpoB 760805 c.999G>C synonymous_variant 0.2
rpoB 760817 c.1011A>G synonymous_variant 0.22
rpoB 760820 c.1014T>C synonymous_variant 0.22
rpoB 760826 c.1020C>G synonymous_variant 0.22
rpoB 760830 c.1024T>C synonymous_variant 0.22
rpoB 760845 p.Thr347Pro missense_variant 0.25
rpoB 760859 c.1053T>C synonymous_variant 0.22
rpoB 760919 c.1113C>G synonymous_variant 0.22
rpoB 760925 c.1119T>C synonymous_variant 0.22
rpoB 760928 c.1122G>C synonymous_variant 0.22
rpoB 760934 c.1128C>T synonymous_variant 0.2
rpoB 760946 c.1140A>G synonymous_variant 0.22
rpoB 761015 c.1209G>C synonymous_variant 0.18
rpoB 761021 c.1215G>C synonymous_variant 0.18
rpoB 761027 c.1221A>G synonymous_variant 0.2
rpoB 761036 c.1230G>C synonymous_variant 0.18
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761094 c.1288C>T synonymous_variant 0.18
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.18
rpoB 761102 c.1296A>G synonymous_variant 0.18
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.18
rpoB 761150 c.1344A>C synonymous_variant 0.22
rpoB 761510 c.1704T>C synonymous_variant 0.17
rpoB 761531 c.1725C>G synonymous_variant 0.15
rpoB 761534 c.1728G>A synonymous_variant 0.15
rpoB 761537 c.1731C>G synonymous_variant 0.17
rpoB 761570 c.1764T>C synonymous_variant 0.17
rpoB 761573 c.1767C>G synonymous_variant 0.17
rpoB 761579 c.1773G>C synonymous_variant 0.18
rpoB 761606 c.1800C>G synonymous_variant 0.17
rpoB 761612 c.1806G>C synonymous_variant 0.18
rpoB 761615 c.1809A>C synonymous_variant 0.18
rpoB 761636 c.1830G>T synonymous_variant 0.18
rpoB 761645 c.1839C>G synonymous_variant 0.25
rpoB 761648 c.1842T>C synonymous_variant 0.25
rpoB 761657 c.1851C>G synonymous_variant 0.27
rpoB 761675 c.1869G>C synonymous_variant 0.23
rpoB 761687 c.1881C>T synonymous_variant 0.25
rpoB 761690 c.1884G>C synonymous_variant 0.23
rpoB 761732 c.1926C>G synonymous_variant 0.23
rpoB 761735 c.1929C>G synonymous_variant 0.23
rpoB 761747 c.1941G>C synonymous_variant 0.25
rpoB 761750 c.1944G>C synonymous_variant 0.27
rpoB 761765 c.1959T>C synonymous_variant 0.27
rpoB 761772 p.His656Ala missense_variant 0.27
rpoB 761778 p.Asn658Asp missense_variant 0.27
rpoB 761791 p.Arg662His missense_variant 0.22
rpoB 761813 c.2007T>C synonymous_variant 0.22
rpoB 761815 p.Ala670Glu missense_variant 0.2
rpoB 761873 c.2067A>G synonymous_variant 0.25
rpoB 761885 c.2079T>C synonymous_variant 0.22
rpoB 761891 c.2085G>C synonymous_variant 0.22
rpoB 761906 c.2100C>G synonymous_variant 0.22
rpoB 761909 c.2103T>C synonymous_variant 0.22
rpoB 761912 c.2106T>C synonymous_variant 0.22
rpoB 761915 p.Asp703Glu missense_variant 0.22
rpoB 761916 p.Asp704Asn missense_variant 0.22
rpoB 762254 c.2448T>C synonymous_variant 0.22
rpoC 762416 c.-954A>G upstream_gene_variant 0.18
rpoC 762443 c.-927G>C upstream_gene_variant 0.22
rpoC 762470 c.-900G>C upstream_gene_variant 0.22
rpoB 762489 p.Val895Gln missense_variant 0.2
rpoC 762509 c.-861T>A upstream_gene_variant 0.2
rpoB 762510 p.Ala902Pro missense_variant 0.2
rpoC 762521 c.-849C>G upstream_gene_variant 0.22
rpoC 762533 c.-837T>C upstream_gene_variant 0.2
rpoC 762536 c.-834T>C upstream_gene_variant 0.2
rpoC 762537 c.-833T>C upstream_gene_variant 0.2
rpoC 762551 c.-819C>T upstream_gene_variant 0.17
rpoC 762929 c.-441G>C upstream_gene_variant 0.29
rpoC 762989 c.-381G>C upstream_gene_variant 0.25
rpoC 762995 c.-375G>T upstream_gene_variant 0.25
rpoC 763028 c.-342T>C upstream_gene_variant 0.25
rpoC 763031 c.-339T>G upstream_gene_variant 0.25
rpoC 763034 c.-336C>G upstream_gene_variant 0.25
rpoC 763040 c.-330C>G upstream_gene_variant 0.25
rpoC 763050 c.-320C>T upstream_gene_variant 0.71
rpoC 763070 c.-300T>C upstream_gene_variant 0.29
rpoC 763402 c.33C>G synonymous_variant 0.33
rpoC 763411 c.42T>G synonymous_variant 0.3
rpoC 763414 c.45T>C synonymous_variant 0.27
rpoC 763441 c.72C>G synonymous_variant 0.27
rpoC 763444 c.75T>C synonymous_variant 0.27
rpoC 763456 c.87A>G synonymous_variant 0.3
rpoC 763468 c.99G>C synonymous_variant 0.25
rpoC 763486 c.117T>C synonymous_variant 0.31
rpoC 763528 c.159G>A synonymous_variant 0.31
rpoC 763546 c.177A>G synonymous_variant 0.33
rpoC 763570 c.201G>C synonymous_variant 0.27
rpoC 763594 c.225C>T synonymous_variant 0.3
rpoC 763633 c.264T>C synonymous_variant 0.31
rpoC 763636 c.267T>C synonymous_variant 0.23
rpoC 763642 c.273G>C synonymous_variant 0.23
rpoC 763658 c.289_291delCTTinsTTG synonymous_variant 0.25
rpoC 763675 c.306C>G synonymous_variant 0.18
rpoC 763933 c.564C>T synonymous_variant 0.15
rpoC 763945 c.576T>C synonymous_variant 0.14
rpoC 764626 c.1257C>T synonymous_variant 0.18
rpoC 764632 c.1263T>C synonymous_variant 0.18
rpoC 764644 c.1275G>C synonymous_variant 0.18
rpoC 764650 c.1281G>T synonymous_variant 0.2
rpoC 764714 c.1345C>T synonymous_variant 0.44
rpoC 764720 c.1351C>T synonymous_variant 0.44
rpoC 764752 c.1383G>C synonymous_variant 0.5
rpoC 764764 c.1395T>C synonymous_variant 0.5
rpoC 764791 c.1422C>G synonymous_variant 0.43
rpoC 764809 c.1440C>T synonymous_variant 0.29
rpoC 764812 c.1443C>G synonymous_variant 0.29
rpoC 764815 c.1446A>G synonymous_variant 0.29
rpoC 764824 c.1455T>C synonymous_variant 0.38
rpoC 764830 c.1461C>G synonymous_variant 0.38
rpoC 764858 c.1489T>C synonymous_variant 0.43
rpoC 764872 c.1503A>G synonymous_variant 0.38
rpoC 764893 c.1524T>C synonymous_variant 0.3
rpoC 764911 c.1542A>G synonymous_variant 0.4
rpoC 764923 c.1554A>G synonymous_variant 0.44
rpoC 764932 c.1563C>A synonymous_variant 0.38
rpoC 764968 c.1599T>C synonymous_variant 0.33
rpoC 764995 c.1626C>G synonymous_variant 0.22
rpoC 766309 c.2940G>C synonymous_variant 0.25
rpoC 766312 c.2943T>G synonymous_variant 0.17
rpoC 766315 c.2946C>G synonymous_variant 0.17
rpoC 766327 c.2958C>G synonymous_variant 0.18
rpoC 766345 c.2976T>C synonymous_variant 0.17
rpoC 766348 c.2979A>G synonymous_variant 0.17
rpoC 766363 c.2994G>C synonymous_variant 0.17
rpoC 766381 c.3012C>T synonymous_variant 0.27
rpoC 766384 c.3015A>G synonymous_variant 0.29
rpoC 766390 c.3021C>T synonymous_variant 0.29
rpoC 766408 c.3039C>T synonymous_variant 0.29
rpoC 766426 c.3057C>T synonymous_variant 0.36
rpoC 766447 c.3078T>C synonymous_variant 0.27
rpoC 766483 c.3114G>C synonymous_variant 0.27
rpoC 766484 p.Val1039Ile missense_variant 0.27
rpoC 766492 c.3123T>C synonymous_variant 0.25
rpoC 766495 c.3126C>T synonymous_variant 0.25
rpoC 766522 c.3153C>G synonymous_variant 0.27
rpoC 766528 c.3159T>C synonymous_variant 0.2
rpoC 766531 c.3162G>T synonymous_variant 0.22
rpoC 766543 c.3174C>T synonymous_variant 0.27
rpoC 766549 c.3180G>C synonymous_variant 0.27
rpoC 766573 c.3204T>C synonymous_variant 0.25
rpoC 766583 p.Gly1072Ser missense_variant 0.25
rpoC 766588 c.3219G>A synonymous_variant 0.25
rpoC 766591 c.3222A>G synonymous_variant 0.25
rpoC 766594 c.3225G>C synonymous_variant 0.25
rpoC 766607 p.Ile1080Leu missense_variant 0.22
rpoC 766630 c.3261G>C synonymous_variant 0.25
rpoC 766645 c.3276A>G synonymous_variant 0.22
mmpL5 776796 p.Val562Ala missense_variant 1.0
mmpS5 778642 p.Trp88* stop_gained 1.0
fbiC 1303818 c.888C>G synonymous_variant 0.17
fbiC 1303836 c.906G>C synonymous_variant 0.17
fbiC 1303845 c.915C>G synonymous_variant 0.18
fbiC 1303846 p.Phe306Val missense_variant 0.18
fbiC 1303854 c.924T>C synonymous_variant 0.27
fbiC 1303860 c.930A>C synonymous_variant 0.27
fbiC 1303881 c.951G>C synonymous_variant 0.2
fbiC 1303884 c.954T>G synonymous_variant 0.22
fbiC 1303911 c.981G>C synonymous_variant 0.22
fbiC 1303914 c.984C>G synonymous_variant 0.22
fbiC 1303920 c.990C>G synonymous_variant 0.22
fbiC 1303923 c.993C>T synonymous_variant 0.22
fbiC 1303929 c.999G>C synonymous_variant 0.2
fbiC 1303947 c.1017T>C synonymous_variant 0.2
fbiC 1303948 p.Gly340Arg missense_variant 0.2
fbiC 1303969 p.Val347Ile missense_variant 0.25
fbiC 1303973 p.Gly348Ala missense_variant 0.25
fbiC 1304469 c.1539G>A synonymous_variant 0.2
fbiC 1304499 c.1569T>G synonymous_variant 0.18
fbiC 1304517 c.1587C>T synonymous_variant 0.18
fbiC 1304520 c.1590A>C synonymous_variant 0.18
fbiC 1304523 c.1593G>T synonymous_variant 0.17
fbiC 1304526 c.1596T>G synonymous_variant 0.18
fbiC 1304544 c.1614T>C synonymous_variant 0.17
fbiC 1304545 p.Val539Thr missense_variant 0.17
fbiC 1304559 p.Glu543Asp missense_variant 0.17
fbiC 1304565 c.1635C>G synonymous_variant 0.17
fbiC 1304568 c.1638T>C synonymous_variant 0.15
fbiC 1304574 c.1644C>G synonymous_variant 0.15
fbiC 1304580 c.1650T>C synonymous_variant 0.15
fbiC 1304640 c.1710A>C synonymous_variant 0.23
fbiC 1304646 c.1716T>C synonymous_variant 0.23
fbiC 1304658 c.1728C>G synonymous_variant 0.15
fbiC 1304670 c.1740G>T synonymous_variant 0.17
fbiC 1304671 p.Val581Thr missense_variant 0.18
fbiC 1304675 p.Gly582Glu missense_variant 0.17
fbiC 1304691 c.1761G>C synonymous_variant 0.2
fbiC 1304694 c.1764A>C synonymous_variant 0.3
fbiC 1304703 c.1773C>G synonymous_variant 0.2
fbiC 1304715 c.1785G>C synonymous_variant 0.2
fbiC 1304724 c.1794A>G synonymous_variant 0.22
fbiC 1304727 c.1797A>G synonymous_variant 0.22
fbiC 1304742 c.1812T>C synonymous_variant 0.25
fbiC 1304748 c.1818T>C synonymous_variant 0.25
fbiC 1304754 c.1824G>A synonymous_variant 0.25
fbiC 1304757 c.1827A>G synonymous_variant 0.29
fbiC 1304784 c.1854T>C synonymous_variant 0.38
Rv1258c 1407009 p.Ala111Asp missense_variant 1.0
atpE 1461113 c.69C>T synonymous_variant 0.15
atpE 1461132 p.Val30Ile missense_variant 0.15
atpE 1461149 c.105T>G synonymous_variant 0.13
atpE 1461150 p.Ile36Val missense_variant 0.15
atpE 1461159 p.Val39Ile missense_variant 0.17
atpE 1461185 c.141G>C synonymous_variant 0.18
atpE 1461189 c.145C>T synonymous_variant 0.17
atpE 1461194 c.150C>T synonymous_variant 0.17
atpE 1461197 c.153A>G synonymous_variant 0.17
atpE 1461219 c.175T>C synonymous_variant 0.2
atpE 1461224 c.180T>C synonymous_variant 0.18
atpE 1461233 c.189A>G synonymous_variant 0.15
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.22
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.22
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.25
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.25
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.18
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.15
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.25
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.29
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.29
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.29
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.14
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.4
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.4
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.5
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.5
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.5
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.25
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.33
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.33
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.33
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.33
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.33
inhA 1674537 c.336C>G synonymous_variant 0.22
inhA 1674542 p.Ala114Glu missense_variant 0.22
inhA 1674549 c.348G>C synonymous_variant 0.25
inhA 1674555 c.354G>A synonymous_variant 0.22
inhA 1674561 c.360C>T synonymous_variant 0.2
inhA 1674564 c.363C>T synonymous_variant 0.22
inhA 1674582 c.381T>C synonymous_variant 0.29
inhA 1674585 c.384T>C synonymous_variant 0.25
inhA 1674589 p.Met130Leu missense_variant 0.25
inhA 1674891 p.Trp230Cys missense_variant 0.89
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834375 c.834G>A synonymous_variant 0.18
rpsA 1834396 c.855G>C synonymous_variant 0.25
rpsA 1834411 c.870T>C synonymous_variant 0.22
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.29
rpsA 1834435 c.894G>C synonymous_variant 0.22
tlyA 1918625 p.Pro229Leu missense_variant 1.0
PPE35 2168838 p.Pro592Leu missense_variant 0.5
Rv1979c 2222721 c.444G>C synonymous_variant 1.0
ahpC 2726345 p.Phe51Leu missense_variant 1.0
Rv2752c 3064883 p.Ser437Cys missense_variant 0.33
Rv2752c 3067095 c.-904G>C upstream_gene_variant 1.0
thyX 3067652 c.294T>C synonymous_variant 0.17
thyX 3067661 c.285C>G synonymous_variant 0.17
Rv3083 3448912 p.Ile137Phe missense_variant 1.0
fprA 3474088 p.Thr28Ala missense_variant 0.22
fprA 3474133 p.Pro43Thr missense_variant 0.9
whiB7 3568676 p.Ser2Ala missense_variant 1.0
alr 3840783 c.637_638insT frameshift_variant 1.0
rpoA 3877482 c.1026C>G synonymous_variant 0.25
rpoA 3877494 p.Glu338Asp missense_variant 0.25
rpoA 3877503 c.1005G>C synonymous_variant 0.25
rpoA 3877507 p.Gly334Ala missense_variant 0.25
rpoA 3877515 c.993G>C synonymous_variant 0.25
rpoA 3877587 c.921A>G synonymous_variant 0.18
rpoA 3877613 p.Ile299Val missense_variant 0.2
rpoA 3877638 c.870T>C synonymous_variant 0.22
rpoA 3877656 c.852T>C synonymous_variant 0.22
rpoA 3877668 c.840A>G synonymous_variant 0.22
rpoA 3877677 p.Ala277Ser missense_variant 0.25
rpoA 3877680 c.828G>C synonymous_variant 0.25
rpoA 3877686 c.822A>G synonymous_variant 0.25
rpoA 3877692 c.816G>C synonymous_variant 0.25
rpoA 3877704 c.804G>T synonymous_variant 0.22
rpoA 3877743 c.765T>C synonymous_variant 0.29
rpoA 3877764 c.744C>G synonymous_variant 0.29
rpoA 3877770 c.738A>G synonymous_variant 0.29
rpoA 3877776 c.732T>C synonymous_variant 0.29
rpoA 3877818 c.690A>G synonymous_variant 0.22
rpoA 3877839 c.669G>C synonymous_variant 0.18
rpoA 3877857 c.651G>A synonymous_variant 0.22
clpC1 4038326 p.Glu793Asp missense_variant 1.0
clpC1 4039388 c.1317C>A synonymous_variant 0.25
clpC1 4039391 c.1314T>G synonymous_variant 0.25
clpC1 4039412 c.1293T>G synonymous_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>G synonymous_variant 0.22
clpC1 4039448 c.1257A>G synonymous_variant 0.2
clpC1 4039454 c.1251A>G synonymous_variant 0.2
clpC1 4039463 c.1242C>G synonymous_variant 0.2
clpC1 4039466 c.1239T>C synonymous_variant 0.22
clpC1 4039469 c.1236T>C synonymous_variant 0.22
clpC1 4039481 c.1224T>G synonymous_variant 0.3
clpC1 4039484 c.1221T>G synonymous_variant 0.3
clpC1 4039517 c.1188C>G synonymous_variant 0.25
clpC1 4039524 p.Phe394Tyr missense_variant 0.25
clpC1 4039526 c.1179G>C synonymous_variant 0.25
clpC1 4039547 c.1158C>G synonymous_variant 0.22
clpC1 4039553 c.1152C>G synonymous_variant 0.22
clpC1 4039565 c.1140G>C synonymous_variant 0.25
clpC1 4040477 c.228G>A synonymous_variant 0.29
panD 4044138 c.144T>C synonymous_variant 0.17
panD 4044150 c.132A>G synonymous_variant 0.17
panD 4044162 c.120A>G synonymous_variant 0.17
embC 4240578 p.Ala239Val missense_variant 0.14
embC 4240591 c.729C>G synonymous_variant 0.15
embC 4240594 c.732C>G synonymous_variant 0.15
embC 4240600 c.738G>C synonymous_variant 0.15
embC 4240632 p.Met257Thr missense_variant 0.18
embC 4240642 c.780G>C synonymous_variant 0.17
embC 4240645 c.783G>C synonymous_variant 0.17
embC 4240654 c.792C>T synonymous_variant 0.2
embC 4240657 c.795G>C synonymous_variant 0.2
embC 4240671 p.Thr270Ile missense_variant 0.18
embC 4240678 c.816T>G synonymous_variant 0.2
embC 4240685 p.Thr275Ala missense_variant 0.2
embC 4240693 c.831T>C synonymous_variant 0.2
embC 4240726 c.864G>C synonymous_variant 0.25
embC 4241026 c.1164C>G synonymous_variant 1.0
embA 4242250 c.-983C>G upstream_gene_variant 1.0
embA 4245388 p.Ala719Gly missense_variant 0.25
embA 4245892 p.Ile887Thr missense_variant 0.4
embB 4247398 c.885G>T synonymous_variant 1.0
embB 4249328 p.Met939Leu missense_variant 1.0
aftB 4267490 c.1347G>C synonymous_variant 1.0
ethA 4326203 p.Ser424* stop_gained 1.0