TB-Profiler result

Run: SRR13861448

Summary

Run ID: SRR13861448

Sample name:

Date: 03-04-2023 09:32:00

Number of reads: 118310

Percentage reads mapped: 1.97

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5210 c.-30C>G upstream_gene_variant 1.0
mmpS5 778670 p.Gln79Pro missense_variant 1.0
rpsL 781927 p.Lys123Met missense_variant 1.0
fbiC 1303561 p.Met211Leu missense_variant 0.33
fbiC 1304806 p.Pro626Thr missense_variant 1.0
rpsA 1834614 p.Ile358Ser missense_variant 1.0
PPE35 2169834 p.Gly260Val missense_variant 1.0
kasA 2518887 p.Gly258Val missense_variant 1.0
ahpC 2725916 c.-277_-276insA upstream_gene_variant 1.0
pepQ 2859750 c.669C>T synonymous_variant 1.0
embA 4245437 p.Met735Ile missense_variant 1.0
embB 4246876 c.363G>A synonymous_variant 1.0
embB 4248914 p.Ala801Thr missense_variant 1.0
ubiA 4269329 p.Lys169Glu missense_variant 1.0
ethA 4326973 p.Trp167Cys missense_variant 1.0
ethA 4327382 p.Ser31Ile missense_variant 1.0