Run ID: SRR13861473
Sample name:
Date: 03-04-2023 09:32:42
Number of reads: 2675688
Percentage reads mapped: 53.57
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7877 | p.His192Gln | missense_variant | 1.0 |
mshA | 576146 | p.Val267Leu | missense_variant | 1.0 |
rpoB | 759869 | c.63C>T | synonymous_variant | 1.0 |
rpoC | 763782 | p.Ser138* | stop_gained | 1.0 |
rpoC | 764568 | p.Lys400Thr | missense_variant | 1.0 |
mmpL5 | 777073 | p.Lys470Glu | missense_variant | 1.0 |
mmpL5 | 777311 | c.1170C>T | synonymous_variant | 1.0 |
mmpL5 | 778981 | c.-501C>A | upstream_gene_variant | 1.0 |
rplC | 801436 | p.Ser210Arg | missense_variant | 1.0 |
fbiC | 1303686 | c.756C>G | synonymous_variant | 1.0 |
rrs | 1472605 | n.760G>C | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674376 | p.Pro59Ser | missense_variant | 1.0 |
tlyA | 1917844 | c.-96C>A | upstream_gene_variant | 1.0 |
tlyA | 1918260 | p.His107Gln | missense_variant | 1.0 |
katG | 2154461 | p.Ala551Pro | missense_variant | 1.0 |
Rv1979c | 2222535 | c.630C>G | synonymous_variant | 1.0 |
kasA | 2518608 | p.Met165Thr | missense_variant | 1.0 |
eis | 2714211 | c.1122G>A | synonymous_variant | 1.0 |
ahpC | 2726250 | p.Gly20Arg | missense_variant | 1.0 |
fprA | 3473932 | c.-75G>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612518 | p.Tyr200Ser | missense_variant | 1.0 |
fbiB | 3641684 | p.Ser50Arg | missense_variant | 1.0 |
embC | 4240263 | p.Val134Ala | missense_variant | 1.0 |
embC | 4240920 | p.Leu353Pro | missense_variant | 1.0 |
embC | 4241504 | p.Val548Met | missense_variant | 1.0 |
embB | 4248000 | p.Asp496Val | missense_variant | 1.0 |
aftB | 4268715 | p.Leu41Pro | missense_variant | 1.0 |
ethR | 4327704 | p.Lys52Asn | missense_variant | 1.0 |