Run ID: SRR13861578
Sample name:
Date: 03-04-2023 09:35:15
Number of reads: 76740
Percentage reads mapped: 7.68
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8335 | p.Met345Arg | missense_variant | 1.0 |
mshA | 576310 | p.Ile321Met | missense_variant | 1.0 |
mmpL5 | 777942 | p.Pro180Leu | missense_variant | 1.0 |
Rv1258c | 1406592 | p.Tyr250Cys | missense_variant | 1.0 |
rrl | 1475277 | n.1620G>C | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834091 | p.Val184Met | missense_variant | 1.0 |
Rv1979c | 2221849 | p.Leu439Gln | missense_variant | 1.0 |
Rv1979c | 2222231 | p.Met312Leu | missense_variant | 1.0 |
eis | 2714723 | p.Cys204Gly | missense_variant | 1.0 |
folC | 2746975 | p.Asp208Glu | missense_variant | 1.0 |
thyA | 3073781 | p.Leu231Ile | missense_variant | 1.0 |
whiB7 | 3568689 | c.-11delT | upstream_gene_variant | 1.0 |
embA | 4245672 | p.Gly814Arg | missense_variant | 1.0 |
embB | 4247458 | p.Tyr315* | stop_gained | 1.0 |
aftB | 4268265 | p.Leu191Gln | missense_variant | 1.0 |