Run ID: SRR13861581
Sample name:
Date: 03-04-2023 09:35:20
Number of reads: 70084
Percentage reads mapped: 1.4
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2288784 | p.Thr153Asn | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9494 | p.Tyr731* | stop_gained | 1.0 |
fgd1 | 491771 | p.Pro330Leu | missense_variant | 1.0 |
rpoB | 762948 | p.Gln1048Glu | missense_variant | 1.0 |
rpoC | 767026 | c.3657G>C | synonymous_variant | 1.0 |
fbiC | 1304225 | p.Gly432Asp | missense_variant | 1.0 |
embR | 1416546 | p.Thr268Ser | missense_variant | 1.0 |
rrl | 1474652 | n.995T>G | non_coding_transcript_exon_variant | 1.0 |
kasA | 2518563 | p.Ala150Gly | missense_variant | 1.0 |
ald | 3087898 | p.Gly360Val | missense_variant | 0.67 |
ethA | 4326245 | p.Asp410Ala | missense_variant | 1.0 |
ethR | 4327132 | c.-417G>A | upstream_gene_variant | 1.0 |
ethA | 4327893 | c.-420C>A | upstream_gene_variant | 1.0 |
gid | 4408070 | p.Trp45Arg | missense_variant | 1.0 |