Run ID: SRR13861582
Sample name:
Date: 03-04-2023 09:35:21
Number of reads: 26338
Percentage reads mapped: 0.53
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9494 | p.Tyr731* | stop_gained | 1.0 |
rpoB | 762948 | p.Gln1048Glu | missense_variant | 1.0 |
fbiC | 1303155 | c.225G>C | synonymous_variant | 1.0 |
fbiC | 1305046 | p.Ser706Pro | missense_variant | 1.0 |
rrl | 1474652 | n.995T>G | non_coding_transcript_exon_variant | 1.0 |
ndh | 2102315 | p.Ile243Thr | missense_variant | 1.0 |
ethA | 4327893 | c.-420C>A | upstream_gene_variant | 1.0 |