TB-Profiler result

Run: SRR13861610
Summary

Run ID: SRR13861610

Sample name:

Date: 03-04-2023 09:36:06

Number of reads: 308498

Percentage reads mapped: 5.15

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5333 p.Met32Val missense_variant 1.0
ccsA 620509 p.Thr207Ser missense_variant 1.0
ccsA 620749 p.Trp287Arg missense_variant 1.0
rpoC 766954 c.3586delG frameshift_variant 1.0
mmpL5 776080 p.Ala801Pro missense_variant 1.0
mmpS5 779649 c.-744T>A upstream_gene_variant 1.0
rplC 801220 p.Ser138Gly missense_variant 1.0
fbiC 1303494 p.Leu188Phe missense_variant 1.0
embR 1416640 c.708C>G synonymous_variant 0.22
rrl 1476502 n.2845G>C non_coding_transcript_exon_variant 1.0
fabG1 1673622 p.Asp61Glu missense_variant 1.0
fabG1 1673718 c.279_280insT frameshift_variant&stop_gained 1.0
katG 2155998 p.Trp38Cys missense_variant 1.0
katG 2156285 c.-174T>G upstream_gene_variant 1.0
ahpC 2726085 c.-108G>A upstream_gene_variant 1.0
ribD 2987458 p.Val207Ala missense_variant 1.0
Rv3236c 3612721 c.395delT frameshift_variant 1.0
alr 3840445 p.Leu326Met missense_variant 1.0
alr 3841156 p.Leu89Val missense_variant 1.0
rpoA 3877966 p.Thr181Asn missense_variant 1.0
panD 4044216 c.65_66insT frameshift_variant 1.0
embB 4247289 p.Ala259Gly missense_variant 1.0
embB 4249154 p.Gly881Arg missense_variant 1.0
ubiA 4270024 c.-191T>G upstream_gene_variant 1.0