Run ID: SRR13861628
Sample name:
Date: 2024-04-16T05:50:08.714527
Number of reads: 249119
Percentage reads mapped: 4.99
Median coverage: 8.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
mmpS5 | 778811 | p.Phe32Ser | missense_variant | 1.0 | clofazimine | |
bedaquiline | ||||||
rrl | 1475224 | n.1567T>C | non_coding_transcript_exon_variant | 1.0 | capreomycin | |
linezolid | ||||||
bacA | 2063516 | p.Val405Ile | missense_variant | 1.0 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
Rv1979c | 2221853 | p.Phe438Ile | missense_variant | 1.0 | clofazimine | |
bedaquiline | ||||||
embC | 4240425 | p.Arg188Pro | missense_variant | 1.0 | ethambutol | |
embA | 4244849 | c.1617C>G | synonymous_variant | 1.0 | ethambutol |