Run ID: SRR14782491
Sample name:
Date: 03-04-2023 11:27:37
Number of reads: 1807250
Percentage reads mapped: 99.51
Strain: lineage4.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
gid | 4407627 | c.574_575delGG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.14 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.27 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.17 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.25 |
mshA | 576719 | p.Glu458Gln | missense_variant | 0.98 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.27 |
rpoC | 764819 | p.Trp484Gly | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.24 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471745 | n.-101_-100insG | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154634 | p.Asn493Ser | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.23 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.27 |
folC | 2747160 | p.Pro147Ser | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.14 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.38 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.67 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568425 | c.255T>C | synonymous_variant | 0.33 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.73 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.28 |
embC | 4240413 | p.Leu184Arg | missense_variant | 0.27 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.32 |
embB | 4246529 | p.Ser6Gly | missense_variant | 0.25 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.4 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.19 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.22 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.98 |
ubiA | 4269295 | p.Met180Thr | missense_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |