TB-Profiler result

Run: SRR14782491

Summary

Run ID: SRR14782491

Sample name:

Date: 03-04-2023 11:27:37

Number of reads: 1807250

Percentage reads mapped: 99.51

Strain: lineage4.1

Drug-resistance: MDR-TB


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
embB 4247429 p.Met306Val missense_variant 1.0 ethambutol
gid 4407627 c.574_575delGG frameshift_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9647 c.2346C>G synonymous_variant 0.14
mshA 576113 p.Arg256Gly missense_variant 0.27
mshA 576456 p.Val370Gly missense_variant 0.17
mshA 576613 c.1266A>C synonymous_variant 0.25
mshA 576719 p.Glu458Gln missense_variant 0.98
rpoC 764367 p.Gly333Ala missense_variant 0.27
rpoC 764819 p.Trp484Gly missense_variant 1.0
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777883 p.Gly200Arg missense_variant 0.24
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471745 n.-101_-100insG upstream_gene_variant 1.0
fabG1 1673553 p.Asp38Glu missense_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154634 p.Asn493Ser missense_variant 1.0
PPE35 2170065 p.Ala183Gly missense_variant 0.23
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2519071 p.Asp319Glu missense_variant 0.27
folC 2747160 p.Pro147Ser missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087816 p.Cys333Gly missense_variant 0.14
fbiD 3339734 p.Ala206Gly missense_variant 0.38
fbiD 3339746 p.Ala210Gly missense_variant 0.67
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568425 c.255T>C synonymous_variant 0.33
rpoA 3878641 c.-134C>G upstream_gene_variant 0.73
embC 4240409 p.Pro183Ala missense_variant 0.28
embC 4240413 p.Leu184Arg missense_variant 0.27
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4246527 p.Ala5Gly missense_variant 0.32
embB 4246529 p.Ser6Gly missense_variant 0.25
embB 4246584 p.Arg24Pro missense_variant 0.4
embB 4248324 p.Ala604Gly missense_variant 0.19
embB 4248328 c.1815G>C synonymous_variant 0.22
embB 4249408 c.2895G>A synonymous_variant 0.98
ubiA 4269295 p.Met180Thr missense_variant 0.98
whiB6 4338595 c.-75delG upstream_gene_variant 1.0