Run ID: SRR14782635
Sample name:
Date: 03-04-2023 11:33:17
Number of reads: 4026953
Percentage reads mapped: 99.63
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9432 | p.Leu711Met | missense_variant | 0.97 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.13 |
ccsA | 620358 | c.468C>T | synonymous_variant | 0.96 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406631 | p.Ala237Val | missense_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476023 | n.2366C>A | non_coding_transcript_exon_variant | 0.98 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.26 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.19 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086966 | p.Asp49Glu | missense_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.6 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.2 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 0.86 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.19 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.43 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245835 | p.Leu868Arg | missense_variant | 0.14 |
embB | 4246529 | p.Ser6Arg | missense_variant | 0.21 |
ethA | 4326184 | c.1290C>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |