Run ID: SRR14801622
Sample name:
Date: 03-04-2023 11:55:29
Number of reads: 1570384
Percentage reads mapped: 99.69
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491751 | c.969C>G | synonymous_variant | 0.96 |
rpoB | 760344 | p.Tyr180His | missense_variant | 0.1 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.24 |
mmpS5 | 778924 | c.-19G>A | upstream_gene_variant | 0.95 |
mmpS5 | 779510 | c.-605C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 0.96 |
atpE | 1460876 | c.-169G>A | upstream_gene_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102887 | c.156G>A | synonymous_variant | 0.97 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.25 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714394 | p.Glu313Asp | missense_variant | 0.96 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.22 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.8 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.67 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.21 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.38 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407528 | c.675A>C | stop_lost&splice_region_variant | 0.94 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |