TB-Profiler result

Run: SRR14801786
Summary

Run ID: SRR14801786

Sample name:

Date: 03-04-2023 12:02:08

Number of reads: 4169607

Percentage reads mapped: 99.6

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6084 p.Gly282Asp missense_variant 0.98
gyrA 7362 p.Glu21Gln missense_variant 1.0
mshA 575378 p.Gly11Arg missense_variant 0.97
mshA 576108 p.Ala254Gly missense_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
fabG1 1673553 p.Asp38Glu missense_variant 0.16
tlyA 1917972 c.33A>G synonymous_variant 0.99
PPE35 2168149 p.Pro822Ser missense_variant 0.98
PPE35 2170065 p.Ala183Gly missense_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pepQ 2860159 p.Ala87Gly missense_variant 0.16
fbiD 3339734 p.Ala206Gly missense_variant 0.55
fbiD 3339749 p.Val211Gly missense_variant 0.25
Rv3083 3448497 c.-7T>A upstream_gene_variant 0.75
whiB7 3568428 c.252A>G synonymous_variant 0.3
rpoA 3878597 c.-90G>C upstream_gene_variant 0.22
rpoA 3878600 c.-93G>C upstream_gene_variant 0.29
rpoA 3878641 c.-134C>G upstream_gene_variant 0.47
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245825 p.Asp865Asn missense_variant 1.0
embB 4248324 p.Ala604Gly missense_variant 0.23
embB 4248328 c.1815G>C synonymous_variant 0.19
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407857 p.Arg116Gly missense_variant 0.98
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0