Run ID: SRR14802106
Sample name:
Date: 03-04-2023 12:15:37
Number of reads: 5376779
Percentage reads mapped: 99.66
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7321 | p.Pro7Leu | missense_variant | 0.94 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
Rv1258c | 1406146 | p.Ala399Thr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.99 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.97 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726687 | c.495C>A | synonymous_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.23 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.53 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 1.0 |
Rv3236c | 3612055 | c.1062G>A | synonymous_variant | 0.99 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.29 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.31 |
rpoA | 3878631 | c.-124C>G | upstream_gene_variant | 0.25 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.44 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |