TB-Profiler result

Run: SRR15244368

Summary

Run ID: SRR15244368

Sample name:

Date: 03-04-2023 12:41:26

Number of reads: 18198

Percentage reads mapped: 98.41

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406153 c.1188G>A synonymous_variant 1.0
fabG1 1673152 c.-288A>G upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518027 c.-88A>C upstream_gene_variant 0.5
kasA 2518586 p.Leu158Phe missense_variant 1.0
alr 3840259 p.Tyr388Asp missense_variant 1.0
ethA 4327770 c.-297G>T upstream_gene_variant 0.5