Run ID: SRR158090
Sample name:
Date: 03-04-2023 14:51:44
Number of reads: 11945074
Percentage reads mapped: 99.41
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.24 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.2 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.21 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.14 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.25 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.23 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.15 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.14 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.28 |
panD | 4043882 | p.Pro134Ser | missense_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.27 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.23 |