TB-Profiler result

Run: SRR16096991
Summary

Run ID: SRR16096991

Sample name:

Date: 03-04-2023 16:15:52

Number of reads: 622593

Percentage reads mapped: 99.53

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 0.11
ccsA 620599 p.Phe237Leu missense_variant 0.12
fbiC 1303016 p.Val29Gly missense_variant 0.19
fbiC 1303549 c.620delT frameshift_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.12
rrl 1474035 n.378C>G non_coding_transcript_exon_variant 0.18
rrl 1474671 n.1014C>A non_coding_transcript_exon_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169902 c.711G>C synonymous_variant 0.11
PPE35 2169910 p.Asn235Tyr missense_variant 0.12
clpC1 4039829 p.Leu292Ile missense_variant 0.11
embC 4241682 p.Ala607Val missense_variant 0.13
embC 4242252 p.Asp797Gly missense_variant 0.13
whiB6 4338595 c.-75delG upstream_gene_variant 1.0