Run ID: SRR16134496
Sample name:
Date: 03-04-2023 16:27:14
Number of reads: 2329201
Percentage reads mapped: 63.51
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Val | missense_variant | 1.0 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7495 | p.Arg65Pro | missense_variant | 0.5 |
gyrA | 7499 | c.198G>C | synonymous_variant | 0.4 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rpoB | 760860 | p.Pro352Ala | missense_variant | 0.96 |
rpoB | 760868 | c.1062C>T | synonymous_variant | 1.0 |
rpoB | 761202 | p.Val466Leu | missense_variant | 0.98 |
mmpL5 | 779116 | c.-636G>A | upstream_gene_variant | 0.36 |
mmpL5 | 779307 | c.-827T>C | upstream_gene_variant | 0.33 |
mmpL5 | 779319 | c.-839T>C | upstream_gene_variant | 0.45 |