TB-Profiler result

Run: SRR17056014
Summary

Run ID: SRR17056014

Sample name:

Date: 03-04-2023 17:48:51

Number of reads: 1232314

Percentage reads mapped: 99.73

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 620145 c.255T>C synonymous_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
embC 4242393 p.Asp844Val missense_variant 0.11
embC 4242423 p.Trp854Leu missense_variant 0.11
embC 4242459 c.2600delG frameshift_variant 0.1
embB 4249649 c.3139delC frameshift_variant 0.12