Run ID: SRR17832799
Sample name:
Date: 03-04-2023 18:21:38
Number of reads: 2580081
Percentage reads mapped: 95.68
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7706 | c.405C>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491139 | c.357G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781509 | c.-51G>T | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473407 | n.-251A>C | upstream_gene_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.11 |
rpsA | 1834956 | p.Ala472Val | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2221919 | p.Val416Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065952 | c.240C>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568626 | c.53delT | frameshift_variant | 1.0 |
Rv3236c | 3613168 | c.-52A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4269336 | c.-500G>A | upstream_gene_variant | 1.0 |
ethA | 4326502 | c.972A>C | synonymous_variant | 1.0 |
whiB6 | 4338229 | p.Leu98Pro | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407959 | p.Ala82Thr | missense_variant | 1.0 |