Run ID: SRR18111724
Sample name:
Date: 2025-03-05T11:18:25.100537
Number of reads: 3216067
Percentage reads mapped: 99.88
Median coverage: 70.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
inhA | 1673346 | c.-856C>G | upstream_gene_variant | 0.11 | ethionamide | Uncertain significance |
isoniazid | Uncertain significance | |||||
inhA | 1673349 | c.-853G>C | upstream_gene_variant | 0.12 | ethionamide | Uncertain significance |
isoniazid | Uncertain significance | |||||
inhA | 1673380 | c.-822C>G | upstream_gene_variant | 0.14 | ethionamide | Uncertain significance |
isoniazid | Uncertain significance | |||||
ndh | 2101835 | p.Tyr403Cys | missense_variant | 1.0 | delamanid | Uncertain significance |
ethionamide | Uncertain significance | |||||
isoniazid | Uncertain significance | |||||
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.2 | pyrazinamide | Uncertain significance |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.19 | pyrazinamide | Uncertain significance |