TB-Profiler result

Run: SRR18213820
Summary

Run ID: SRR18213820

Sample name:

Date: 03-04-2023 19:30:39

Number of reads: 2993225

Percentage reads mapped: 99.68

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491061 p.Met93Ile missense_variant 0.95
rpoB 759620 c.-187A>C upstream_gene_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472654 n.809G>A non_coding_transcript_exon_variant 0.17
rrl 1474018 n.361G>C non_coding_transcript_exon_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
thyA 3073806 c.666C>G synonymous_variant 0.18
whiB6 4338595 c.-75delG upstream_gene_variant 1.0