Run ID: SRR18913752
Sample name:
Date: 03-04-2023 20:50:38
Number of reads: 1806040
Percentage reads mapped: 99.85
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8674 | p.Ile458Thr | missense_variant | 1.0 |
fgd1 | 491004 | c.222G>C | synonymous_variant | 1.0 |
fbiC | 1303003 | p.Ala25Thr | missense_variant | 1.0 |
fbiC | 1304183 | p.Ala418Val | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475029 | n.1372T>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
clpC1 | 4038745 | p.Thr654Ala | missense_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |