Run ID: SRR19976648
Sample name:
Date: 03-04-2023 21:47:42
Number of reads: 1286953
Percentage reads mapped: 99.65
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.33 |
ccsA | 619877 | c.-14G>T | upstream_gene_variant | 0.11 |
mmpR5 | 779387 | c.400dupC | frameshift_variant | 1.0 |
fbiC | 1304476 | c.1547dupC | frameshift_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.15 |
kasA | 2518187 | p.Ile25Leu | missense_variant | 0.12 |