TB-Profiler result

Run: SRR19976650

Summary

Run ID: SRR19976650

Sample name:

Date: 03-04-2023 21:47:46

Number of reads: 1179511

Percentage reads mapped: 99.82

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mmpL5 776165 p.Asn772Lys missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2170100 c.513G>T synonymous_variant 0.11
fbiD 3339273 c.156T>G synonymous_variant 0.18
clpC1 4038234 p.Arg824His missense_variant 0.11