TB-Profiler result

Run: SRR2101352
Summary

Run ID: SRR2101352

Sample name:

Date: 03-04-2023 23:40:03

Number of reads: 710301

Percentage reads mapped: 99.04

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
ccsA 620027 p.Pro46Gln missense_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
fabG1 1673323 c.-117C>A upstream_gene_variant 0.11
inhA 1674640 p.Met147Val missense_variant 0.1
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2167674 p.Leu980Gln missense_variant 0.13
PPE35 2170046 c.567C>A synonymous_variant 0.12
PPE35 2170509 p.Ala35Val missense_variant 0.14
folC 2746870 p.Glu243Asp missense_variant 0.13
pepQ 2860000 p.Leu140Pro missense_variant 0.11
Rv2752c 3064850 p.Phe448Leu missense_variant 0.11
thyX 3068078 c.-133A>G upstream_gene_variant 0.11
Rv3236c 3612515 p.Arg201His missense_variant 0.13
clpC1 4038251 p.Phe818Leu missense_variant 0.11
embC 4241554 c.1692G>T synonymous_variant 0.11
embB 4248654 p.Met714Thr missense_variant 0.1
whiB6 4338593 c.-73delT upstream_gene_variant 1.0
whiB6 4338596 c.-75G>C upstream_gene_variant 1.0