Run ID: SRR2101653
Sample name:
Date: 03-04-2023 23:50:31
Number of reads: 567635
Percentage reads mapped: 98.91
Strain: lineage4.9
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
gid | 4407851 | c.351delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7233 | p.Arg665His | missense_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.96 |
mshA | 575761 | c.414C>T | synonymous_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.29 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.24 |
rpoB | 759814 | p.Asp3Gly | missense_variant | 1.0 |
rpoB | 760820 | c.1014T>C | synonymous_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777313 | p.Pro390Thr | missense_variant | 1.0 |
mmpL5 | 778272 | p.Pro70Gln | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781502 | c.-58G>T | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.3 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fbiA | 3641507 | p.Ala322Val | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |