TB-Profiler result

Run: SRR21658570
Summary

Run ID: SRR21658570

Sample name:

Date: 04-04-2023 02:23:58

Number of reads: 1480627

Percentage reads mapped: 99.8

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.12
rrs 1472720 n.875C>A non_coding_transcript_exon_variant 0.12
rrs 1472728 n.883G>T non_coding_transcript_exon_variant 0.13
rrl 1474421 n.764G>A non_coding_transcript_exon_variant 0.11
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0