Run ID: SRR21678365
Sample name:
Date: 04-04-2023 02:51:21
Number of reads: 593771
Percentage reads mapped: 99.31
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6678 | p.Pro480Gln | missense_variant | 0.14 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.43 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777152 | p.Met443Ile | missense_variant | 1.0 |
mmpL5 | 777562 | p.Ala307Thr | missense_variant | 1.0 |
mmpL5 | 777597 | p.Arg295Leu | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
inhA | 1673709 | c.-493C>A | upstream_gene_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.17 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.15 |
PPE35 | 2170416 | p.Ala66Val | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518141 | c.29dupG | frameshift_variant | 0.14 |
ald | 3087193 | p.Gly125Val | missense_variant | 0.11 |
fbiB | 3642415 | p.Pro294Gln | missense_variant | 0.17 |
alr | 3840319 | p.Pro368Thr | missense_variant | 0.11 |
rpoA | 3878058 | c.450G>A | synonymous_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243615 | p.Arg128Leu | missense_variant | 0.17 |
embA | 4243632 | p.Gly134Arg | missense_variant | 0.14 |
aftB | 4267149 | p.Glu563Gly | missense_variant | 1.0 |
aftB | 4267155 | p.Gln561Arg | missense_variant | 1.0 |
aftB | 4267221 | p.Ala539Asp | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |